February 17, 2008

Retort to a creationist lecture pt. 2

Blogging on Pseudo-Scientific Douche-BagsThis is the second post in a series examining the lecture given by creationist author Anders Gärdeborn this past Thursday at Uppsala Universitet, by invitation from evangelical christian student organization Credo.

Now, with the introduction out of the way, I will continue by examining what Gärdeborn presented as, in his view, solid scientific arguments against evolution. I have, as far as possible, tried to formulate my text without giving Gärdeborn too much credit for them as these are in no way new arguments, nor are they his. They have been for a long time, and they continue to be, part of the general creationist discourse.

For the sake of order, I have grouped them roughly under the headings "the structured universe", "the 'devolution' of nature", "evolution 'within kinds'" and "biological information". I had planned on examining all four of them in one post, but since I want to be quite meticulous and I'm busy working on a shorter print version of this essay in Swedish, I'm choosing to publish the first two in advance.

The structured universe

The first supposedly scientific argument is hilariously outdated. Gärdeborn formulated it something like - "the universe is finely calibrated and full of complex structure, ergo it has to have an intelligent designer behind it!" We know that this is nothing but the old fallacious argument from incredulity, but it's worth examining it a bit further with regard to this apparent "structure" he was talking about. The word "structure" in this case being used instead of the one chiefly used by creationists - design. "If there is a design, there must be a designer!"

This cognitive fallacy can be beautifully illustrated by the well-known and often quoted anecdote involving philosopher Ludwig Wittgenstein:

W. and his companion are on a stroll through Cambridge.

"Tell me", says W., "why do people always say it was natural for man to assume that the Sun went round the Earth rather than that the Earth was rotating [around the sun]?"

"Why?" said his surprised interlocutor, "well, obviously, because it just looks as though the Sun is going round the Earth."

"Hmm", retorted W., "well, what would it have looked like if it had looked as though the Earth was rotating [around the sun]?"

In our particular situation Wittgenstein might just as well have asked, "what would the universe have looked like if it had looked as though it had no structure?" The answer is the same: it would have looked no different.

Some logical fallacies are errors of perspective. The way something appears to us can be regarded as a property of that something we are observing; we automatically assume this in practically everything we do. But this property, the way it appears, is also interesting in itself because it reflects an implicit property of that to which it appears, us. In other words we might say that the universe looks as though it's organized and structured simply because we are looking for organization and structure in the universe. It's the method our brains use to describe our surroundings to us in a way that we can find useful. The fact that we have a penchant for observing structures and patterns in the biological world is a reflection of us, not it. It's a bias in our thinking which is also inevitably mirrored in our language. Even the most experienced and senior scientist might express wonder at the structure of that which he or she is studying, but a scientist realizes that this structure, this purposeful organization, is only apparent. Our brains and in extension our language and preferred choice of words might deceive and mislead us more than we usually are able to acknowledge.

I can only say that it's unfortunate that Gärdeborn did not read up a little more on the basics of cognitive neuroscience before embarrassing himself by falling into such an easily avoidable fault.

The "devolution" of nature

While still on the subject of structure, Gärdeborn misrepresents evolution as a linear process through which "things with structure develop from things with less structure." This is a totally unfounded oversimplification. Deviously, creationists only use it because it serves their purpose. It's a classical straw man - they misrepresent their opponent's position so that it's easier to refute. But as it turns out, even this misrepresentation is not an easy one to counter.

While evolutionary processes have indeed increased the complexity of organisms over evolutionary time, this is in no way an intrinsic property of evolution itself. In fact, evolution has decreased complexity many times. One of the most poignant examples being parasitic organisms, many of which have lost structures and functions in comparison with their free-living counterparts. The parasitic bacteria in the genus Mycoplasma, for example, have lost their external cell walls as well as most of their metabolic pathways as a part in their adaptation to the highly specialized conditions within their hosts. This is seen in their genomes; Mycoplasmas have some of the smallest ones observed in any organism.

At the core of this misleading definition of evolution is then a serious problem. In order to affirm that evolution goes from less structure (or lower complexity) to more structure (or higher complexity) you have to suppose that evolution has a predestined goal. But not only that; as a result of this false assumption you would have to suppose that organisms which exhibit less complexity are less evolved. Of course no biologist would ever suppose this, it's not only the greatest but also the most easily avoidable fallacy you can make in evolutionary thought, as any good high-school biology textbook will tell you. Yet this is what Gärdeborn proclaims evolutionary scientists do. What poor understanding.

The reason it's so common to ascribe goal and intention to evolutionary processes is simply that we have a hard time describing or understanding evolution in other terms. This is another way in which our language misleads us. Within the world of research, we all of course know what we really mean to say.

What is Gärdeborn getting at then? What purpose does this flawed definition of evolution serve? This is the old "second-law-of-thermodynamics-argument" against evolution, maybe the silliest and most simple-minded argument creationists have ever used. The argument owes its recent revival to mathematician and intelligent design proponent Granville Sewell who, in the beginning of the decade, published a couple of articles on the matter. Articles that have subsequently been panned by serious biologists, physicists and mathematicians alike.

The second law of thermodynamics states, in one of its simplified forms, that natural processes in a system only can lead to the increase in the entropy of the system. Entropy being a sort of measure of "disorder" or lack of complexity. "But wait a minute now! How can evolution then increase the complexity of living organisms!? Wouldn't that decrease the entropy?" Believe it or not, that is the entire argument. Since nobody doubts the veracity of the second law, it must be evolution that is false.

I've already established that evolution does not necessarily lead to organisms with higher complexity than their ancestors. But even if we assumed that it always does, the second law of thermodynamics is only valid for closed systems. Earth imports energy from the sun and thus contributes to the total entropy of the universe. In the same way, organisms import energy in order to sustain themselves, decreasing their own local entropy, but at the same time contribute to the increase in the total entropy of their surroundings. Neither earth nor living organisms are closed systems.

The way creationists usually respond to this fact is by invoking the argument from incredulity again, saying that the fact that organisms can import energy, and thus supposedly "break" the second law, is so unlikely that it simply must mirror an purposeful design. This in fact makes the "second-law-of-thermodynamics-argument" a non-argument. As comically ridiculous as it is, creationists are still using it.

Aside from the fact that it negatesitself, it's a particularly bad argument because it's merely a rhetorical one, not a scientific one. By appealing to our "common sense" and our own observations of nature, and not least to our cognitive bias towards structure and purposefulness, creationists try to win us over. "Surely", they'll say, "you must notice that in nature everything has a tendency to break down, not to be built up, as evolutionists tell you. Nature devolves, it doesn't evolve." It's devious, it's misguided and it's not science. The second law is not about probabilities or common sense, it's about thermodynamics and entropy. Creationists can either produce an entropy calculation showing that evolution breaks the second law, which is impossible, or they can shut up. That's my modest advice.

Edited February 21. Thanks to SK for pointing out an error.

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February 16, 2008

Retort to a creationist lecture pt. 1

Blogging on Pseudo-Scientific Douche-BagsThis is the first post in a series examining the lecture given by creationist author Anders Gärdeborn this past Thursday at Uppsala Universitet, by invitation from evangelical christian student organization Credo.

First of all, thanks to those of you who noted my last post by linking on their blogs, on www.evolutionsteori.se and on the VoF forum. Much appreciated.

Just as I questioned whether or not it was worth going to the creationist lecture in the first place, I'm now questioning whether or not it's worth taking the time to write this essay. In my experience, no active advocate of creationism is going to be persuaded by scientific evidence no matter how logically, coherently or pedagogically it's presented. They deal in ignorance, deception, incoherence and misdirection; finding so called "evidence" for their outrageously faulty claims, always made on faulty grounds, only after they've decided what it is they want evidence for. When proven wrong on one particular point, they just coolly move on to the next piece of ridiculous "evidence", unyielded and unconvinced, leaving sound arguments either unheard or unheeded. To argue against an avid creationist is a Sisyphean task if there ever was one.

Still, I've decided that it is worth countering Anders Gärdeborn's embarrassing display, not because I ever expect or even hope to convince him, those that invited him to speak, or any creationist for that matter, but because I feel it's worth informing those who can see through the creationist dreck but don't quite have all the knowledge to understand exactly why it is dreck. Gärdeborns lecture lends itself to this purpose since it brings up almost all of the misinformed creationist arguments. Besides, I love biology and hate to see it misused and misinterpreted.

As I mentioned in my first impressions of the lecture, I did take notes the whole time. But as the fusillade of unfounded pseudoscience fired at the audience was far quicker than my pen, I didn't get everything down. Therefore, and because I fear that this essay is going to be long enough already, I'm only going to focus on the most alarmingly bad misconceptions and misinterpretations. Whether or not these are honest misconceptions or deliberate lies in Anders Gärdeborn's case is a question I leave open.

I've divided this essay into three parts: a commentary on Gärdeborn's introduction, a critical review of his so called "scientific" arguments against evolution as presented in the first half of the lecture, and finally an examination of the creationist claims made in the second half of the lecture.

Let's get started then...

Evolution as a faith-based worldview

Gärdeborn started the presentation in a decidedly evangelical tone, almost preaching to the auditorium, lamenting the fact that young people had "thrown out the bible" because the belief that science has proven the bible wrong has invaded the popular thought. One of the very first slides he showed contrasted the "evolutionary worldview" with the creationist worldview, drawing direct lines from atheism to evolutionary thought and from theism to creationism. A preposterous proposition seeing as many of those of us who accept evolution also are believers. I'm not, but that's beside the point. Even though the emergence of evolutionary thought made it possible to have a conception of the world and our existence within it that didn't require the presence of a supernatural almighty being, adopting an evolutionary point of view does not automatically make you atheist.

At one point he argued that it is no less faithful to not believe in god than it is to believe in god. I think a fair number of people could agree with him on this, only that this is not an argument neither for nor against evolution. It's a complete non sequitur. But by arguing in this way early in his presentation Gärdeborn quickly established what he structures his arguments around: he aims to equalize creationism and "evolutionism", as creationists so maliciously and misleadingly call it, as worldviews with equal grounds. This is the first monumental mistake that he makes.

Evolution is not a worldview. "Evolutionism" is a devious rhetorical trick-word creationists use to make evolutionary theory appear as a collection of beliefs and opinions, or values even. Evolutionary theory is no such thing. (At this point he is not yet talking about the supposed negative moral implications of "evolutionism", but he'll get there soon enough.) Gärdeborn's definition of evolutionary theory as the "worldview evolutionists use to interpret scientific results", is telling of his ignorance, willful or not, of the stringency that underlies the scientific process. Evolutionary theory generates scientific results and allows us to make testable predictions. He talked about "creationist glasses" and "evolutionist glasses", trying to make the point that both views depend equally on faith; you interpret scientific results based on what "glasses" you're wearing. This is just another way of falsely equating evolutionary thought, which is based on observation, experimentation and logical inference, with creationism, which is not.

Revelation

What is creationism based on then? Next Gärdeborn proceeded to exalt the value of revelation as a means of acquiring knowledge. Yes, you read that right - revelation. He compared it to the knowledge that a child gets from its parents or teachers; god, of course, being the ultimate parent and teacher. A metaphor so inane it almost collapses into its own vacuum. In a logical tumble, which I'm sure he himself thinks is fully plausible but that any sensible and reasonable person finds ridiculous, he affirms that since no human being was present at the moment of creation, no human being can state anything about it, only god can, his god, the christian god, because he was the only one present. Therefore only creation can account for the origin of life, not evolution. This is a puzzling argument seeing as the matter of the origin of life is best left to biochemistry, even though evolutionary thought can inform the theories that exist.

Another problem that Gärdeborn seems to have with evolution, and with science in general it seems, is that it's changing it's damned mind all the time, making the argument that this makes science just as subjective as the interpretations of the so called revealed word. Once again he's trying to equate the scientific process to creationism using faulty grounds. I guess it's so much easier to only learn something once instead of, you know, having to be updating your knowledge as science advances. Bo-oring! He only in passing acknowledges that science is supposed to review itself as new empirical evidence is gathered while reviews of the revealed word are based solely on someone sitting down by a desk thinking really, really hard. And naturally he completely fails to observe that evolutionary thought underlies many of the advancements that have greatly improved our life quality and increased our life expectancy, while creationism has yet to come up with a any sort of testable prediction, much less one that results in direct benefits for us.

>>In my next post I will continue this essay by addressing the apparent structure in the universe, the intentionally misleading concept of "biological information" and some general creationists misconceptions about evolution.

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February 15, 2008

First thoughts on yesterday's creationist lecture here in Uppsala

Blogging on Pseudo-Scientific Douche-BagsWhen I first heard that Credo, an evangelical christian student organization, had invited a creationist to speak at the university on the subject of "Intelligent Creationism", I was hesitant about whether I wanted to go or not. Of course it's important to be there to counter creationist arguments, and to actually know what it is they're saying, but I suspected that it would just be the same old misconceptions and lies so I questioned if I really was going to get something out of it or if I would just get angry and frustrated for nothing.

But anyway, I decided to go, and I wasn't surprised. The speaker Anders Gärdeborn brought up little else but the same ridiculous arguments, misconceptions and misinterpretations, exaggerations, faulty logic and outright lies that you've heard over and over, just as I suspected knew. Gärdeborn comes from the fundamentalist and literalistic organization Genesis which claims to "work for a christian view of the sciences and for the biblical view to be heard in the schools and society". The biblical view being that god created earth its creatures and all of the universe in 6 days. (I won't honor them with a link, but if you really want to I'm sure you can Google them. As far as I know the organization is limited to Sweden.)

He focused a lot on "structure" and how the universe and nature was full of it, on how evolutionary theory has not been able to account for the appearance of anything new and on the intentionally misleading and biologically preposterous concept of "information", among many other things. Interestingly, and confusingly, he was prepared to accept some sort of evolution (although of course he would never call it that) "within kinds", giving rise to the variation we see for instance between races of dogs, but attributed it to "pre-programmed genetic potential". It's all terribly confusing, misleading and of course very wrong.

I did take quite extensive notes and as soon as I can take some time I'm going to go over them and write a proper and more detailed entry. But it was difficult to keep up with his sketchy logic and train of argumentation, this man was really firing out crap at an alarming speed - I just couldn't keep up, so my account of the evening is going to focus on a few of the most alarmingly bad misconceptions and lies, not only about evolution but about basic biology. I wish there would have been more physicists and geologists in the auditorium because, even though I have only very basic knowledge in those subjects, I got the nagging suspicion that there were considerable mistakes in his account of those fields as well.

It's also in its place to mention how remarkable it is that the university allows for their facilities and resources to be used for these sort of things. Certainly Credo is a student organization and as such it is affiliated to the university students' union. But the bare minimum that the university should have required was an equal presentation on modern biology and evolutionary science to refute the creationist claims. The university stands for the nurture and dissemination of knowledge, and that was certainly not upheld yesterday. A mere questions and answers session after the presentation is not enough. As my professor pointed out to me as we were talking prior to the presentation: would the university allow for an astrologer or a holocaust-denialist to come and give a lecture at the university's facilities unquestioned? Most certainly not. But under the banner of not discriminating against the christian students I guess it is entirely possible, which is telling of why we're still dealing with this particular brand of counterscientific trash at this level.

Fortunately, most of the audience seemed to be on the critical (read: sensible) side, including christians, with only a few being openly in agreement with what was being presented. The overall feeling I got was that the lecture had been arranged for the benefit of those that organized it - it was more of a statement from Credo and was never meant to add anything or shed new light on the debate. Something which makes the university's uncritical approach even more remarkable.

Ultimately, I'm glad I went. Not so much because of Anders Gärdeborn's presentation, but because during the discussion that followed I met some like-minded people, students in different fields, and started talking about getting together in a more organized way to discuss these questions. I'm always happy to make connections and if that's the least I get from yesterday's shameless display of pseudoscientific dreck, I will be very happy indeed.

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February 12, 2008

Darwin Day!

Happy Darwin Day everybody! Celebrations are in order I think. I'm going to celebrate in my own twisted way two days from now by going to a creationist lecture here in Uppsala. I'm sure it's going to be the same ignorant dreck as always, but I'm excited nonetheless. Anyway...

Why then, is it a good idea to remember Charles Darwin's birthday? For those of us that work with evolution, pretty much everyday is Darwin day. The emergence of evolutionary thought was such a radical event that nothing in the modern life sciences can be properly envisioned except through evolutionary eyes - as the famous quote by Theodosius Dobzhansky goes: "Nothing in biology makes sense except in the light of evolution". Evolutionary thought permeates everything from the study of life's diversity to the development of new drugs and medical technologies - practical applications that we all benefit greatly from. But aside from this, it has a remarkable power in informing us about our own existence and place in the universe.

Yet 199 years after Darwin's birth and 148 years after On the Origin of Species first publication, evolution, proven many times over, is in question. That's why I think it's important that we remember the date. Maybe one day we'll arrive at a time where knowledge and rationality win over ignorance and superstition and Darwin day might become not as much a statement, but the celebration of a life dedicated to the scientific process and the honest quest for truth; and ultimately, of the great benefits that science has given humanity.

Ignorance more frequently begets confidence than does knowledge: it is those who know little, and not those who know much, who so positively assert that this or that problem will never be solved by science.

- Charles Darwin

Contemplate your wonderful existence and never stop evolving.

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February 09, 2008

I moved in a week ago...



... and the apartment still looks like this. So shame on me. But unpacking is just such a damn chore. It's worse than packing!




February 06, 2008

"New life" pt. 2 and the minimal genome

ResearchBlogging.orgIn my last post I discussed why "new" or "man-made" life wouldn't really be all that new and I ended with the suggestion that the road towards making "new" synthetic life might be a goal all in itself. I would like to elaborate a little bit on that and then write something about why Mycoplasma genitalium is so interesting in this respect.

The end of creating "synthetic organisms" (a term used loosely) would be something like "engineered" bacteria that would produce specific substances or maybe even catalyze particularly interesting biochemical reactions. This is not that different from what we're already capable of doing, granted it would be in a larger scale. Putting synthesized DNA, especially designed for a purpose, into living cells and having them express that DNA is common practice in molecular biology, even though it has its limitations. You can buy the cells from catalogs and the whole process is carried out with ready-made kits by just following the instructions in the box.

The strength of producing "synthetic organisms" would be that you could create entire systems and not just get the bacterium to produce one or a few substances. You could design the biochemical cellular environment of that organism on a larger scale and gear it towards one preset goal. This is because theoretically you could control every aspect of that organism's genome: not only everything that the cell produces but also how it regulates itself. But the key thing to look out for here is "every aspect". We are still far away from having a complete understanding of how genomes are made up. So a scenario where we have absolute control of an organism's biochemical processes seems far ahead in the future - another reason why the headlines of "new" or "man-made" life are exaggerations - but getting there we will undoubtedly have to learn more about how evolution has built genomes and what exactly is needed to constitute a functioning genome. A very exciting prospect.

It's in this regard that Mycoplasma genitalium is important. It has the smallest known genome of any self-replicating organism and it's one of the simplest free-living bacteria there are. It only has 482 protein-coding genes, compared to us humans' approx. 20,000 (at the last count). In 1995 it became the second genome to be sequenced for this reason and no doubt this is what makes it such a good candidate to be the stepping stone towards the creation of a "synthetic" organism. By looking at Mycoplasma we can deduce what the minimal requirements are for a genome to work: how many genes are necessary for sustaining life?

At the last count in Mycoplasma genitalium from 2006, 387 out of 482 protein-coding genes and 43 structural RNA genes are essential for the growth of this bacterium. This was deduced by mutating gene after gene, making them useless one after the other, and seeing whether or not the mutant bacteria could live and grow. The real interesting number though, is 110. 110 of the 387 essential genes still have unknown function. The genes have been identified in the DNA, but it's still unknown what they do or what hypothetical proteins are produced from them.

So we're not yet in a time where we know every aspect of what an organism does, not even one of the simplest ones, and we're not yet in a time where we can design an entire viable genome in our interest and thus control every aspect of an organisms biochemical processes, or in other words, "play god".

If or when that day comes, there's no doubt that many exciting and useful applications will be available to us. But let's not forget that during the process we will have acquired a wealth of knowledge about ourselves and indeed life itself that will be difficult to overestimate. Then the answer to the question whether or not we should "create life" (again, using the term very loosely) just because we can, gains a whole new dimension.

Glass, J.I. (2006). Essential genes of a minimal bacterium. Proceedings of the National Academy of Sciences, 103(2), 425-430. DOI: 10.1073/pnas.0510013103

Gibson, D.G., Benders, G.A., Andrews-Pfannkoch, C., Denisova, E.A., Baden-Tillson, H., Zaveri, J., Stockwell, T.B., Brownley, A., Thomas, D.W., Algire, M.A., Merryman, C., Young, L., Noskov, V.N., Glass, J.I., Venter, J.C., Hutchison, C.A., Smith, H.O. (2008). Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome. Science DOI: 10.1126/science.1151721


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